PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G27400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 313aa    MW: 34031.3 Da    PI: 9.4414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G27400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.14.3e-33652061128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                      lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++    
  OGLUM05G27400.1  65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsdev 153
                      799************.99****998885665442...133333665557**********.555666688******************8444555 PP

              NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         + +W++tgk+++v++ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OGLUM05G27400.1 154 dggETRWHKTGKTRPVMT-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206
                      544778************.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3856225IPR003441NAC domain
PROSITE profilePS5100533.165225IPR003441NAC domain
PfamPF023657.7E-1566206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTWCNSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ  60
DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG  120
VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DEVDGGETRW HKTGKTRPVM TNGRPRGYKK  180
ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSTAAAAAK  240
EASAAAAAAV VNSNYSIVHG HQGGGGGSFL KEANVVHEFY DPAATMGYRP PAPAAHFAPN  300
FAVHAARNSF GGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-116520615140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009830.0AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639992.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-126NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0E0A2S70.0A0A0E0A2S7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA020356-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73